Useful Software

I use a lot of different software tools in the course of my research, so I need a way to keep track of them in case something destroys my computer. That is the purpose of this post.

Python and python related tools

  • Anaconda python distribution (version 3.5)
  • Snakemake for managing scientific workflows

Jupyter tools

  • jupyter
  • nteract: for running notebooks on desktop
  • nbstripout: for removing output from ipython notebooks before commiting to a git repository.

Text editing

  • emacs with spacemacs

Mac OS tools

  • Alfred: a better version of the Mac OS spotlight application
  • Spectacle: keyboard shortcuts for moving windows around.
  • dash: offline documentation browser
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